Bones is a well-loved TV show with legions of fans, but the stars, David Boreanaz and Emily Deschanel, have just as many opinions about the best episodes of the series as everyone else. Bones ran for 12 seasons with continued success for many reasons, as it balanced adhering to the formulas of the procedural genre with some fun twists and iconic characters. Boreanaz plays the emotion-driven FBI agent Seeley Booth, with Deschanel joining him as his unlikely new partner, the logical forensic anthropologist Dr. Temperance Brennan. It’s this dynamic that keeps us invested in Bones.
The chemistry between the two characters is obvious from the beginning, with Booth’s playful nickname for Brennan, “Bones,” becoming an iconic part of the series. In a conversation with TV Insider, both Boreanaz and Deschanel discussed their favorite episodes and moments throughout the series’ 12 seasons. While it’s easy to point to installments that focus on the budding romance between Booth and Brennan, Bones also excels at putting the characters in unusual situations and paying homage to classic films and TV shows of history. These special episodes provide exciting breaks in the tension, as the series can get serious.
David Boreanaz has talked about a Bones revival, with Deschanel also expressing interest in returning to the story. However, it’s unlikely that we’ll see Booth and Brennan return to our screens anytime soon. However, this creates the perfect opportunity for audiences to continue revisiting the many episodes that made Bones such a hit. Boreanaz clearly appreciates both the trope-y special episodes as well as the plot-heavy, dramatic installments with equal measure. We can’t help agreeing with his picks for some of the best Bones episodes that hit screens from 2005 to 2017, changing the crime procedural forever.

Pilot
Season 1, Episode 1
Of the pilot, Boreanaz said:
“I always go back to the pilot, because it was so young and unpredictable. There’s an inkling of understanding where the characters could go, where they could be, what the possibility of it is, how kind of raw it is.”
This captures both the hope and nostalgia that will always be wrapped up in any pilot episode. The bones of a show are there, but the essence and the ups and downs the characters will face are still far away. The Booth and Brennan that we grew to love are at their most flawed and underdeveloped here, leaving room for the series to help these people grow and evolve as the show progresses.
Double Trouble In The Panhandle
Season 4, Episode 12
Season 4 was a period of growth and growing pains for Bones. Brennan was devastated by the betrayal of Zack Addy (Eric Millegan), her intern, at the end of season 3, and this carried into the fourth season. While this was a shakeup, it turned out to be the best thing for Bones, and the series didn’t waste time exploring new and a little less serious territory. The terrifying nature of season 3’s villain allowed season 4 to have a little more fun and put the characters in zany settings, like the circus.
“Double Trouble in the Panhandle” proved that Bones was still great and could bounce back from a shakeup in the cast and format of the series. After finding the remains of conjoined twins on the border of Oklahoma and Texas, Booth and Brennan go undercover with the circus, pretending they have an act so they can investigate the people who might have known the twins. There are some aspects of “Double Trouble in the Panhandle” that haven’t aged as well, but Booth and Brennan are at their best when they’re undercover.